Difference between revisions of "BioNLP 2023"
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| + | ==BIONLP 2015 Workshop Schedule== | ||
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| + | <font face="verdana" color="#000080"> Keynote by Kevin Knight: The DARPA Big Mechanism Program </font> | ||
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| + | DARPA's Big Mechanism Program aims to develop automatic machine-reading technology to distill grounded, causal mechanisms from technical literature, and to assemble those mechanisms into a large, operational model. The first Big Mechanism domain is cancer biology. This talk will describe the goals of the program and the techniques being developed. | ||
==BIONLP 2015 Call for Papers== | ==BIONLP 2015 Call for Papers== | ||
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Submissions should be anonymous. | Submissions should be anonymous. | ||
| − | Program committee: | + | <h5>Program committee:</h5> |
* Emilia Apostolova, DePaul University, Chicago, USA | * Emilia Apostolova, DePaul University, Chicago, USA | ||
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* Halil Kilicoglu, National Library of Medicine | * Halil Kilicoglu, National Library of Medicine | ||
* Jin-Dong Kim, Database Center for Life Science, Japan | * Jin-Dong Kim, Database Center for Life Science, Japan | ||
| − | * Alexander Koller, University of Potsdam | + | <!-- * Alexander Koller, University of Potsdam --> |
* Robert Leaman, National Library of Medicine | * Robert Leaman, National Library of Medicine | ||
* Zhiyong Lu, National Library of Medicine | * Zhiyong Lu, National Library of Medicine | ||
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* Kirk Roberts, National Library of Medicine | * Kirk Roberts, National Library of Medicine | ||
* Andrey Rzhetsky, University of Chicago | * Andrey Rzhetsky, University of Chicago | ||
| − | * Yoshimasa Tsuruoka | + | * Yoshimasa Tsuruoka, University of Tokyo, Japan |
* Karin Verspoor, The University of Melbourne, Australia | * Karin Verspoor, The University of Melbourne, Australia | ||
* John Wilbur, National Library of Medicine | * John Wilbur, National Library of Medicine | ||
* Pierre Zweigenbaum, LIMSI - CNRS, France | * Pierre Zweigenbaum, LIMSI - CNRS, France | ||
| + | <h5>Organizers</h5> | ||
| + | * Kevin Bretonnel Cohen, University of Colorado School of Medicine | ||
| + | * Dina Demner-Fushman, US National Library of Medicine | ||
| + | * Sophia Ananiadou, National Centre for Text Mining and University of Manchester, UK | ||
| + | * Jun-ichi Tsujii, Microsoft Research Asia | ||
| + | <!-- | ||
==BIONLP 2014 Workshop Schedule== | ==BIONLP 2014 Workshop Schedule== | ||
Registration is now open (scroll to 2-Day Workshops): [http://acl2014.org/Registration.htm ACL 2014 Registration ] | Registration is now open (scroll to 2-Day Workshops): [http://acl2014.org/Registration.htm ACL 2014 Registration ] | ||
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* Thamar Solorio, The University of Alabama at Birmingham | * Thamar Solorio, The University of Alabama at Birmingham | ||
* Yang Liu, The University of Texas at Dallas | * Yang Liu, The University of Texas at Dallas | ||
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Revision as of 12:39, 12 June 2015
BIONLP 2015 Workshop Schedule
Keynote by Kevin Knight: The DARPA Big Mechanism Program
DARPA's Big Mechanism Program aims to develop automatic machine-reading technology to distill grounded, causal mechanisms from technical literature, and to assemble those mechanisms into a large, operational model. The first Big Mechanism domain is cancer biology. This talk will describe the goals of the program and the techniques being developed.
BIONLP 2015 Call for Papers
Date of workshop: July 30, 2015
Venue: BioNLP 2015 will be held in conjunction with ACL 2015 in Beijing, People’s Republic of China.
IMPORTANT DATES
- 14 May 2015: Submission due date
- 4 June 2015: Notification of acceptance
- 21 June 2015: Camera-ready papers due
- 30 July 2015: Workshop, Beijing, PRC
Over the course of the past thirteen years, the ACL BioNLP workshop associated with the SIGBIOMED special interest group has established itself as the primary venue for presenting foundational research in language processing for the biological and medical domains. The workshop serves as both a venue for bringing together researchers in bio- and clinical NLP and exposing these researchers to the mainstream ACL research, and a venue for informing the mainstream ACL researchers about this fast-growing and important domain. The workshop will continue presenting work on a broad and interesting range of topics in NLP. Submissions are particularly solicited in the areas of:
- Wide-scale entity identification and normalization
- Extraction of complex relations and events
- Discourse analysis
- Coreference resolution
- Text mining
- Literature based discovery
- Summarization
- Question-answering
- Lexical and terminological resources for BioNLP
- Annotation (corpora), standards
- Resources and strategies for system testing and evaluation
- Processing and annotation platforms
- Interoperable platforms for biomedical text mining
- Domain adaptation
- Translating NLP research to practice
Submission instructions:
Long papers may consist of up to eight (8) pages of content, plus two pages for references; final versions of long papers will be given one additional page (up to 9 pages with 2 pages for references) so that reviewers’comments can be taken into account.
Poster submissions may consist of up to four (4) pages of content, plus 2 pages for references. Upon acceptance, short papers will be given five (5) pages in the proceedings and 2 pages for references. Authors are encouraged to use this additional page to address reviewers comments in their final versions.
https://www.softconf.com/acl2015/BioNLP/ Authors who cannot submit a PDF file electronically should contact the workshop organizers well in advance of the submission deadline. Dual submission policy: note that papers may NOT be submitted to the BioNLP 2014 workshop if they are or will be concurrently submitted to another meeting or publication. Submissions should be anonymous.
Program committee:
- Emilia Apostolova, DePaul University, Chicago, USA
- Eiji Aramaki, University of Tokyo
- Alan Aronson, National Library of Medicine
- Sabine Bergler, Concordia University, Canada
- Olivier Bodenreider, National Library of Medicine
- Aaron Cohen, Oregon Health and Science University
- Nigel Collier, EBI, the National Institute of Informatics
- Noémie Elhadad, Columbia University
- Marcelo Fiszman, National Library of Medicine
- Filip Ginter, University of Turku
- Cyril Grouin, LIMSI - CNRS, France
- Antonio Jimeno Yepes, IBM, Melbourne Area, Australia
- Halil Kilicoglu, National Library of Medicine
- Jin-Dong Kim, Database Center for Life Science, Japan
- Robert Leaman, National Library of Medicine
- Zhiyong Lu, National Library of Medicine
- Timothy Miller, Children's Hospital Boston
- Makoto Miwa, Toyota Technological Institute, Japan
- Aurelie Neveol, LIMSI - CNRS, France
- Naoaki Okazaki, Tohoku University
- Jong Park, KAIST
- Sampo Pyysalo, University of Turku
- Bastien Rance, Hopital Europeen Georges Pompidou
- Thomas Rindflesch, National Library of Medicine
- Kirk Roberts, National Library of Medicine
- Andrey Rzhetsky, University of Chicago
- Yoshimasa Tsuruoka, University of Tokyo, Japan
- Karin Verspoor, The University of Melbourne, Australia
- John Wilbur, National Library of Medicine
- Pierre Zweigenbaum, LIMSI - CNRS, France
Organizers
* Kevin Bretonnel Cohen, University of Colorado School of Medicine * Dina Demner-Fushman, US National Library of Medicine * Sophia Ananiadou, National Centre for Text Mining and University of Manchester, UK * Jun-ichi Tsujii, Microsoft Research Asia