Difference between revisions of "SIGBIOMED"

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Biomedical language processing poses specific technical challenges that make it of interest to general NLP practitioners and make it of compelling importance to the larger field of biomedical informatics. The purpose of the BioMed SIG is to bring together researchers in NLP, bioinformatics, medical informatics, and computational biology, providing a venue (both wiki and workshop) for the promotion and dissemination of original research in this area.</h4>
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Biomedical language processing poses specific technical challenges that make it of interest to general NLP practitioners and make it of compelling importance to the larger field of biomedical informatics. The purpose of the BioMed SIG is to bring together researchers in NLP, bioinformatics, medical (clinical) informatics, and computational biology, providing a venue (both wiki and workshop) for the promotion and dissemination of original research in this area.</h4>
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<!-- <div style="width:85%;margin:0;font-size:120%;text-align:left;"> Election of SIG Officers </div>
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<div style="width:85%;margin:0;font-size:120%;text-align:left;"> Nominating committee for the 2016 BioNLP elections: Nigel Collier, Zhiyong Lu,  Kirk Roberts.<br>
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Please contact the nominating committee members to nominate candidates for the SIG chair and secretary positions.
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The candidates must be ACL members in good standing of the SIG. The nominators must be members in good standing of the SIG.
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The voting period will begin once the final slate of candidates and voting instructions are announced and no later than July 1st.
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The voting closes on July 31st, The results will be announced at the BioNLP workshop on August 12th.
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</div> -->
  
 
== Upcoming Events ==
 
== Upcoming Events ==
  
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<!-- <div style="width:85%;margin:0;font-size:120%;text-align:left;"> [http://www.nactem.ac.uk/biotxtm2014/index.php BioTxtM 2014]  the Fourth Workshop on Building and Evaluating Resources for Health and Biomedical Text Processing,  May 31, 2014, Reykjavík, Iceland </div> -->
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<div style="width:85%;margin:0;font-size:120%;text-align:left;"> [[BioNLP_Workshop|BioNLP 2024 Workshop and Shared Tasks]] at [https://2024.aclweb.org/ ACL], August 16, 2024, Bangkok, Thailand </div>
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<div style="width:85%;margin:0;font-size:120%;text-align:left;"> [[BioNLP_Workshop|BioNLP 2014 Workshop ]] June 26-27, 2014, Baltimore, MD. </div>
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== Past Events ==
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<div style="width:85%;margin:0;font-size:120%;text-align:left;"> [https://bionlp.nlm.nih.gov/cl4health2024/ CL4Health 2024].  Patient-oriented language processing at [https://lrec-coling-2024.org/ LREC-COLING], May 20, 2024, Turin, Italy </div>
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[[File: CL4Health2024.jpg|150px|thumb|left|CL4Health 2024 in-person presentations]]
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<p> Thanks to our special volunteer Ibai Guillén-Pacho, Universidad Politécnica de Madrid
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<div style="width:85%;margin:0;font-size:120%;text-align:left;"> PLAIN LANGUAGE ADAPTATION OF BIOMEDICAL ABSTRACTS [https://bionlp.nlm.nih.gov/plaba2023/ PLABA. @ TAC 2023] </div>
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<div style="width:85%;margin:0;font-size:120%;text-align:left;"> TRECVID Task on Medical Video Question Answering
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[https://medvidqa.github.io/ MedVidQA 2023] </div>
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<div style="width:85%;margin:0;font-size:120%;text-align:left;"> [[BioNLP_2023|BioNLP 2023 Workshop and Shared Tasks]] at [https://2023.aclweb.org/ ACL], July 13, 2023, Toronto, Canada </div>
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<!--
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[[File: BioNLP2023.jpg|150px|thumb|left|BioNLP 2023 in-person presentations]]
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<div style="width:85%;margin:0;font-size:120%;text-align:left;"> [[BioNLP_Workshop|BioNLP 2022 Workshop]] at [https://www.2022.aclweb.org ACL], May 26, 2022, Dublin, Ireland  </div>
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*<div style="width:85%;margin:0;font-size:120%;text-align:left;"> [[BioNLP_Workshop|BioNLP 2020 Workshop]] at [https://acl2020.org/ ACL 2020], July 9, 2020, Online. https://virtual.acl2020.org/workshop_W4.html (ACL registration required) </div>
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*<div style="width:85%;margin:0;font-size:120%;text-align:left;"> [https://tac.nist.gov// Text Analysis Conference ]  Drug-Drug Interaction Extraction from Drug Labels (DDI). November 12, TAC 2019 workshop in Gaithersburg, Maryland, USA.</div>
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*<div style="width:85%;margin:0;font-size:120%;text-align:left;"> [http://www.trec-cds.org/2019.html  TREC Precision Medicine / Clinical Decision Support Track]  November 13–15, 2019, TREC 2019 conference at NIST in Gaithersburg, MD, USA.</div>
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*<div style="width:85%;margin:0;font-size:120%;text-align:left;"> [https://www.amia.org/amia2019/workshops AMIA NLP-WG Presymposium], Saturday, November 16, 2019, Washington, DC. </div>
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<div style="width:85%;margin:0;font-size:120%;text-align:left;"> [[BioNLP_Workshop|BioNLP 2019 Workshop]] at [http://www.acl2019.org/EN/index.xhtml ACL 2019], August 1, 2019, Florence, Italy. </div>
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<div style="width:85%;margin:0;font-size:120%;text-align:left;"> BioNLP 2019 Shared Task  [https://sites.google.com/view/mediqa2019 MEDIQA 2019]  </div> -->
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<!--  *<div style="width:85%;margin:0;font-size:120%;text-align:left;"> [https://ohnlp.github.io/AMIANLPWG2018/NLP-WG.html AMIA NLP-WG Presymposium] at AMIA 2018, November 3, 2018, San Francisco, California. </div>
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*<div style="width:85%;margin:0;font-size:120%;text-align:left;"> [https://tac.nist.gov// Text Analysis Conference ]  Drug-Drug Interaction Extraction from Drug Labels (DDI) and Systematic Review Information Extraction (SRIE) tracks. November 13-14 TAC 2018 workshop in Gaithersburg, Maryland, USA.</div>
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*<div style="width:85%;margin:0;font-size:120%;text-align:left;"> [http://www.trec-cds.org/2018.html  TREC Precision Medicine / Clinical Decision Support Track]  November 14–16, 2018 TREC 2018 conference at NIST in Gaithersburg, MD, USA.</div> -->
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<!-- <div style="width:85%;margin:0;font-size:120%;text-align:left;"> [[BioNLP_Workshop|BioNLP 2018 Workshop]] at ACL 2018, July 19, 2018, Melbourne, Australia. </div> -->
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<!--  <div style="width:85%;margin:0;font-size:120%;text-align:left;"> [[BioNLP_Workshop|BioNLP 2017 Workshop and Shared Tasks]] at ACL 2017, August 4, 2017, Vancouver, Canada. </div>
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<div style="width:85%;margin:0;font-size:120%;text-align:left;"> [http://www.nactem.ac.uk/biotxtm2016/ Fifth Workshop on Building and Evaluating Resources for Biomedical Text Mining (BioTxtM2016), December 12, 2016,  COLING 2016, Osaka, Japan]  </div>
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<div style="width:85%;margin:0;font-size:120%;text-align:left;"> [http://text-machine.cs.uml.edu/clinical-nlp-2016 Clinical Natural Language Processing Workshop (ClinicalNLP), December 11, 2016,  COLING 2016, Osaka, Japan]  </div>
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<div style="width:85%;margin:0;font-size:120%;text-align:left;"> [[BioNLP_Workshop|BioNLP 2016 Workshop and Shared Tasks]] at ACL 2016, August, 2016, Berlin, Germany.
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<div style="width:85%;margin:0;font-size:120%;text-align:left;"> [http://www.nactem.ac.uk/biotxtm2014/index.php BioTxtM 2014]  the Fourth Workshop on Building and Evaluating Resources for Health and Biomedical Text Processing,  May 31, 2014, Reykjavík, Iceland </div> -->
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<!-- <div style="width:85%;margin:0;font-size:120%;text-align:left;"> [[BioNLP_Workshop|BioNLP 2014 Workshop ]] June 26-27, 2014, Baltimore, MD. </div> -->
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<!-- <div style="width:85%;margin:0;font-size:120%;text-align:left;"> [[BioNLP_Workshop|BioNLP 2015 Workshop ]] at ACL-IJCNLP 2015, July 30, 2015, Beijing, China. -->
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<!-- == Recent Events == -->
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<!-- <div style="width:85%;margin:0;font-size:120%;text-align:left;"> [[BioNLP_Workshop|BioNLP 2018 Workshop]] at ACL 2018, July 19, 2018, Melbourne, Australia. </div> -->
  
 
== Organization and Governance ==  
 
== Organization and Governance ==  
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== Workshop Proceedings ==
 
== Workshop Proceedings ==
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https://www.aclweb.org/anthology/venues/bionlp/
 
<ul>
 
<ul>
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<li style="text-align:left;margin-bottom:0.1em;">[http://aclweb.org/anthology/W/W13/#1900 Proceedings of the 2013 Workshop on Biomedical Natural Language Processing]</li>
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<li style="text-align:left;margin-bottom:0.1em;">[http://aclweb.org/anthology/W/W12/#2400 Proceedings of the 2012 Workshop on Biomedical Natural Language Processing]</li>
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<li style="text-align:left;margin-bottom:0.1em;">[https://aclanthology.org/volumes/2023.bionlp-1/ Proceedings of the 22nd Workshop on Biomedical Language Processing]</li>
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<li style="text-align:left;margin-bottom:0.1em;">[http://aclweb.org/anthology/W/W11/W11-02.pdf Proceedings of the 2011 Workshop on Biomedical Natural Language Processing]</li>
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<li style="text-align:left;margin-bottom:0.1em;">[https://aclanthology.org/volumes/2022.bionlp-1/ Proceedings of the 21st Workshop on Biomedical Language Processing]</li>
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<li style="text-align:left;margin-bottom:0.1em;">[http://www.aclweb.org/anthology/W/W10/#1900 Proceedings of the 2010 Workshop on Biomedical Natural Language Processing]</li>
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<li style="text-align:left;margin-bottom:0.1em;">[https://aclanthology.org/volumes/2021.bionlp-1/ Proceedings of the 20th Workshop on Biomedical Language Processing]</li>
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<li style="text-align:left;margin-bottom:0.1em;">[http://aclweb.org/anthology-new/W/W09/#1300 Proceedings of the BioNLP 2009 Workshop]</li>
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<li style="text-align:left;margin-bottom:0.1em;">[https://www.aclweb.org/anthology/2020.bionlp-1.pdf  Proceedings of the 2020 Workshop on Biomedical Natural Language Processing]</li>
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<li style="text-align:left;margin-bottom:0.1em;">[http://aclweb.org/anthology-new/W/W09/#1400 Proceedings of the BioNLP 2009 Workshop Companion Volume] BioNLP'09 shared task on Event Extraction</li>
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<li style="text-align:left;margin-bottom:0.1em;">[https://www.aclweb.org/anthology/volumes/W19-50/ Proceedings of the 2019 Workshop on Biomedical Natural Language Processing]</li>
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<li style="text-align:left;margin-bottom:0.1em;">[http://www.biomedcentral.com/1471-2105/9?issue=S11 Proceedings of the BioNLP 08 ACL Workshop: Themes in biomedical language processing.] BMC Bioinformatics supplement</li>
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<li style="text-align:left;margin-bottom:0.1em;">[https://www.aclweb.org/anthology/volumes/W18-23/  Proceedings of the 2018 Workshop on Biomedical Natural Language Processing]</li>
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<li style="text-align:left;margin-bottom:0.1em;">[http://www.aclweb.org/anthology-new/W/W07/#1000 BioNLP 07.] Biological, translational, and clinical language processing</li>
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<li style="text-align:left;margin-bottom:0.1em;">[https://www.aclweb.org/anthology/volumes/W17-23/  Proceedings of the 2017 Workshop on Biomedical Natural Language Processing]</li>
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<li style="text-align:left;margin-bottom:0.1em;">[http://www.aclweb.org/anthology-new/W/W06/#3300 HLT-NAACL BioNLP 06 Workshop on Linking Natural Language and Biology]</li>
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<li style="text-align:left;margin-bottom:0.1em;">[https://www.aclweb.org/anthology/W16-2900.pdf  Proceedings of the 2016 Workshop on Biomedical Natural Language Processing]</li>
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<li style="text-align:left;margin-bottom:0.1em;">[http://www.aclweb.org/anthology-new/W/W05/#1300 ACL-ISMB 2005 Workshop on Linking Biological Literature, Ontologies and Databases: Mining Biological Semantics]</li>
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<li style="text-align:left;margin-bottom:0.1em;">[https://www.aclweb.org/anthology/W15-3800.pdf  Proceedings of the 2015 Workshop on Biomedical Natural Language Processing]</li>
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<li style="text-align:left;margin-bottom:0.1em;">[http://www.aclweb.org/anthology-new/W/W04/#1200 International Joint Workshop on Natural Language Processing in Biomedicine and its Applications (NLPBA/BioNLP 04)]</li>
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<li style="text-align:left;margin-bottom:0.1em;">[http://acl2014.org/acl2014/W14-34/index.html Proceedings of the 2014 Workshop on Biomedical Natural Language Processing]</li>
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<li style="text-align:left;margin-bottom:0.1em;">[http://www.aclweb.org/anthology-new/W/W03/#1300 ACL 2003 Workshop on Natural Language Processing in Biomedicine]</li>
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<li style="text-align:left;margin-bottom:0.1em;">[https://www.aclweb.org/anthology/volumes/W13-19/ Proceedings of the 2013 Workshop on Biomedical Natural Language Processing]</li>
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<li style="text-align:left;margin-bottom:0.1em;">[http://www.aclweb.org/anthology-new/W/W02/#0300 ACL-02 Workshop on Natural Language Processing in the Biomedical Domain]
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<li style="text-align:left;margin-bottom:0.1em;">[https://www.aclweb.org/anthology/volumes/W12-24/ Proceedings of the 2012 Workshop on Biomedical Natural Language Processing]</li>
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<li style="text-align:left;margin-bottom:0.1em;">[https://www.aclweb.org/anthology/events/bionlp-2011/ Proceedings of the 2011 Workshop on Biomedical Natural Language Processing]</li>
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<li style="text-align:left;margin-bottom:0.1em;">[https://www.aclweb.org/anthology/volumes/W10-19/ Proceedings of the 2010 Workshop on Biomedical Natural Language Processing]</li>
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<li style="text-align:left;margin-bottom:0.1em;">[https://www.aclweb.org/anthology/events/bionlp-2009/ Proceedings of the BioNLP 2009 Workshop]</li>
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<li style="text-align:left;margin-bottom:0.1em;">[http://aclweb.org/anthology/W09-14 Proceedings of the BioNLP 2009 Workshop Companion Volume] BioNLP'09 shared task on Event Extraction</li>
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<li style="text-align:left;margin-bottom:0.1em;">[https://bmcbioinformatics.biomedcentral.com/articles/supplements/volume-9-supplement-11 Proceedings of the BioNLP 08 ACL Workshop: Themes in biomedical language processing.] BMC Bioinformatics supplement</li>
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<li style="text-align:left;margin-bottom:0.1em;">[http://aclweb.org/anthology/W07-10 BioNLP 07.] Biological, translational, and clinical language processing</li>
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<li style="text-align:left;margin-bottom:0.1em;">[https://www.aclweb.org/anthology/volumes/W06-33/ HLT-NAACL BioNLP 06 Workshop on Linking Natural Language and Biology]</li>
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<li style="text-align:left;margin-bottom:0.1em;">[http://aclweb.org/anthology/W05-13 ACL-ISMB 2005 Workshop on Linking Biological Literature, Ontologies and Databases: Mining Biological Semantics]</li>
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<li style="text-align:left;margin-bottom:0.1em;">[https://www.aclweb.org/anthology/volumes/W04-12/ International Joint Workshop on Natural Language Processing in Biomedicine and its Applications (NLPBA/BioNLP 04)]</li>
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<li style="text-align:left;margin-bottom:0.1em;">[https://www.aclweb.org/anthology/volumes/W03-13/ ACL 2003 Workshop on Natural Language Processing in Biomedicine]</li>
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<li style="text-align:left;margin-bottom:0.1em;">[https://www.aclweb.org/anthology/volumes/W02-03/ ACL-02 Workshop on Natural Language Processing in the Biomedical Domain]
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</li></ul>
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== Related Workshop Proceedings ==
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<ul><li style="text-align:left;margin-bottom:0.1em;">[http://www.nactem.ac.uk/biotxtm2014/programme.php Fourth Workshop on Building and Evaluating Resources for Health and Biomedical Text Processing (BioTxtM 2014)]
 
</li></ul>
 
</li></ul>

Latest revision as of 03:59, 9 July 2024


ACL Special Interest Group on Biomedical Natural Language Processing


Welcome to the home page for the Biomedical Natural Language Processing Special Interest Group of the Association for Computational Linguistics (ACL). This SIG is dedicated to language processing in the biological, biomedical, and clinical domain. Biomedical language processing poses specific technical challenges that make it of interest to general NLP practitioners and make it of compelling importance to the larger field of biomedical informatics. The purpose of the BioMed SIG is to bring together researchers in NLP, bioinformatics, medical (clinical) informatics, and computational biology, providing a venue (both wiki and workshop) for the promotion and dissemination of original research in this area.



Upcoming Events

BioNLP 2024 Workshop and Shared Tasks at ACL, August 16, 2024, Bangkok, Thailand

Past Events

CL4Health 2024. Patient-oriented language processing at LREC-COLING, May 20, 2024, Turin, Italy
CL4Health 2024 in-person presentations

Thanks to our special volunteer Ibai Guillén-Pacho, Universidad Politécnica de Madrid

PLAIN LANGUAGE ADAPTATION OF BIOMEDICAL ABSTRACTS PLABA. @ TAC 2023
TRECVID Task on Medical Video Question Answering MedVidQA 2023
BioNLP 2023 Workshop and Shared Tasks at ACL, July 13, 2023, Toronto, Canada

Organization and Governance

BioMed SIG Constitution
Officers and Membership information
The SIGBioMed organizing committee and members

Workshop Proceedings

https://www.aclweb.org/anthology/venues/bionlp/

Related Workshop Proceedings

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