Sampo Pyysalo


2017

pdf pdf bib CoNLL 2017 Shared Task: Multilingual Parsing from Raw Text to Universal Dependencies
[K17-3001]: Daniel Zeman | Martin Popel | Milan Straka | Jan Hajič | Joakim Nivre | Filip Ginter | Juhani Luotolahti | Sampo Pyysalo | Slav Petrov | Martin Potthast | Francis Tyers | Elena Badmaeva | Memduh Gokirmak | Anna Nedoluzhko | Silvie Cinková | Jan Hajič jr. | Jaroslava Hlaváčová | Václava Kettnerová | Zdeňka Urešová | Jenna Kanerva | Stina Ojala | Anna Missilä | Christopher D. Manning | Sebastian Schuster | Siva Reddy | Dima Taji | Nizar Habash | Herman Leung | Marie-Catherine de Marneffe | Manuela Sanguinetti | Maria Simi | Hiroshi Kanayama | Valeria de Paiva | Kira Droganova | Héctor Martínez Alonso | Çağrı Çöltekin | Umut Sulubacak | Hans Uszkoreit | Vivien Macketanz | Aljoscha Burchardt | Kim Harris | Katrin Marheinecke | Georg Rehm | Tolga Kayadelen | Mohammed Attia | Ali Elkahky | Zhuoran Yu | Emily Pitler | Saran Lertpradit | Michael Mandl | Jesse Kirchner | Hector Fernandez Alcalde | Jana Strnadová | Esha Banerjee | Ruli Manurung | Antonio Stella | Atsuko Shimada | Sookyoung Kwak | Gustavo Mendonça | Tatiana Lando | Rattima Nitisaroj | Josie Li

pdf pdf bib Fully Delexicalized Contexts for Syntax-Based Word Embeddings
[W17-6511]: Jenna Kanerva | Sampo Pyysalo | Filip Ginter

2016

pdf pdf bib Intrinsic Evaluation of Word Vectors Fails to Predict Extrinsic Performance
[W16-2501]: Billy Chiu | Anna Korhonen | Sampo Pyysalo

pdf pdf bib How to Train good Word Embeddings for Biomedical NLP
[W16-2922]: Billy Chiu | Gamal Crichton | Anna Korhonen | Sampo Pyysalo

pdf pdf bib Deep Learning with Minimal Training Data: TurkuNLP Entry in the BioNLP Shared Task 2016
[W16-3009]: Farrokh Mehryary | Jari Björne | Sampo Pyysalo | Tapio Salakoski | Filip Ginter

pdf pdf bib Cancer Hallmark Text Classification Using Convolutional Neural Networks
[W16-5101]: Simon Baker | Anna Korhonen | Sampo Pyysalo

pdf pdf bib Universal Dependencies v1: A Multilingual Treebank Collection
[L16-1262]: Joakim Nivre | Marie-Catherine de Marneffe | Filip Ginter | Yoav Goldberg | Jan Hajič | Christopher D. Manning | Ryan McDonald | Slav Petrov | Sampo Pyysalo | Natalia Silveira | Reut Tsarfaty | Daniel Zeman

pdf pdf bib Typed Entity and Relation Annotation on Computer Science Papers
[L16-1607]: Yuka Tateisi | Tomoko Ohta | Sampo Pyysalo | Yusuke Miyao | Akiko Aizawa

pdf pdf bib Attending to Characters in Neural Sequence Labeling Models
[C16-1030]: Marek Rei | Gamal Crichton | Sampo Pyysalo

2015

pdf pdf bib Sharing annotations better: RESTful Open Annotation
[P15-4016]: Sampo Pyysalo | Jorge Campos | Juan Miguel Cejuela | Filip Ginter | Kai Hakala | Chen Li | Pontus Stenetorp | Lars Juhl Jensen

pdf pdf bib SETS: Scalable and Efficient Tree Search in Dependency Graphs
[N15-3011]: Juhani Luotolahti | Jenna Kanerva | Sampo Pyysalo | Filip Ginter

pdf pdf bib Towards the Classification of the Finnish Internet Parsebank: Detecting Translations and Informality
[W15-1815]: Veronika Laippala | Jenna Kanerva | Anna Missilä | Sampo Pyysalo | Tapio Salakoski | Filip Ginter

pdf pdf bib Universal Dependencies for Finnish
[W15-1821]: Sampo Pyysalo | Jenna Kanerva | Anna Missilä | Veronika Laippala | Filip Ginter

pdf pdf bib Towards Universal Web Parsebanks
[W15-2124]: Juhani Luotolahti | Jenna Kanerva | Veronika Laippala | Sampo Pyysalo | Filip Ginter

2013

pdf pdf bib Proceedings of the BioNLP Shared Task 2013 Workshop
[W13-2000]: Claire Nédellec | Robert Bossy | Jin-Dong Kim | Jung-jae Kim | Tomoko Ohta | Sampo Pyysalo | Pierre Zweigenbaum

pdf pdf bib Overview of BioNLP Shared Task 2013
[W13-2001]: Claire Nédellec | Robert Bossy | Jin-Dong Kim | Jung-jae Kim | Tomoko Ohta | Sampo Pyysalo | Pierre Zweigenbaum

pdf pdf bib Overview of the Cancer Genetics (CG) task of BioNLP Shared Task 2013
[W13-2008]: Sampo Pyysalo | Tomoko Ohta | Sophia Ananiadou

pdf pdf bib Overview of the Pathway Curation (PC) task of BioNLP Shared Task 2013
[W13-2009]: Tomoko Ohta | Sampo Pyysalo | Rafal Rak | Andrew Rowley | Hong-Woo Chun | Sung-Jae Jung | Sung-Pil Choi | Sophia Ananiadou | Jun’ichi Tsujii

2012

pdf pdf bib PubMed-Scale Event Extraction for Post-Translational Modifications, Epigenetics and Protein Structural Relations
[W12-2410]: Jari Björne | Sofie Van Landeghem | Sampo Pyysalo | Tomoko Ohta | Filip Ginter | Yves Van de Peer | Sophia Ananiadou | Tapio Salakoski

pdf pdf bib New Resources and Perspectives for Biomedical Event Extraction
[W12-2412]: Sampo Pyysalo | Pontus Stenetorp | Tomoko Ohta | Jin-Dong Kim | Sophia Ananiadou

pdf pdf bib Bridging the Gap Between Scope-based and Event-based Negation/Speculation Annotations: A Bridge Not Too Far
[W12-3806]: Pontus Stenetorp | Sampo Pyysalo | Tomoko Ohta | Sophia Ananiadou | Jun’ichi Tsujii

pdf pdf bib Open-domain Anatomical Entity Mention Detection
[W12-4304]: Tomoko Ohta | Sampo Pyysalo | Jun’ichi Tsujii | Sophia Ananiadou

pdf pdf bib brat: a Web-based Tool for NLP-Assisted Text Annotation
[E12-2021]: Pontus Stenetorp | Sampo Pyysalo | Goran Topić | Tomoko Ohta | Sophia Ananiadou | Jun’ichi Tsujii

2011

pdf pdf bib From Pathways to Biomolecular Events: Opportunities and Challenges
[W11-0214]: Tomoko Ohta | Sampo Pyysalo | Jun’ichi Tsujii

pdf pdf bib Towards Exhaustive Event Extraction for Protein Modifications
[W11-0215]: Sampo Pyysalo | Tomoko Ohta | Makoto Miwa | Jun’ichi Tsujii

pdf pdf bib SimSem: Fast Approximate String Matching in Relation to Semantic Category Disambiguation
[W11-0218]: Pontus Stenetorp | Sampo Pyysalo | Jun’ichi Tsujii

pdf pdf bib Proceedings of BioNLP Shared Task 2011 Workshop
[W11-1800]: Jun’ichi Tsujii | Jin-Dong Kim | Sampo Pyysalo

pdf pdf bib Overview of BioNLP Shared Task 2011
[W11-1801]: Jin-Dong Kim | Sampo Pyysalo | Tomoko Ohta | Robert Bossy | Ngan Nguyen | Jun’ichi Tsujii

pdf pdf bib Overview of the Epigenetics and Post-translational Modifications (EPI) task of BioNLP Shared Task 2011
[W11-1803]: Tomoko Ohta | Sampo Pyysalo | Jun’ichi Tsujii

pdf pdf bib Overview of the Infectious Diseases (ID) task of BioNLP Shared Task 2011
[W11-1804]: Sampo Pyysalo | Tomoko Ohta | Rafal Rak | Dan Sullivan | Chunhong Mao | Chunxia Wang | Bruno Sobral | Jun’ichi Tsujii | Sophia Ananiadou

pdf pdf bib Overview of the Entity Relations (REL) supporting task of BioNLP Shared Task 2011
[W11-1812]: Sampo Pyysalo | Tomoko Ohta | Jun’ichi Tsujii

pdf pdf bib BioNLP Shared Task 2011: Supporting Resources
[W11-1816]: Pontus Stenetorp | Goran Topić | Sampo Pyysalo | Tomoko Ohta | Jin-Dong Kim | Jun’ichi Tsujii

2010

pdf pdf bib Event Extraction for Post-Translational Modifications
[W10-1903]: Tomoko Ohta | Sampo Pyysalo | Makoto Miwa | Jin-Dong Kim | Jun’ichi Tsujii

pdf pdf bib Scaling up Biomedical Event Extraction to the Entire PubMed
[W10-1904]: Jari Björne | Filip Ginter | Sampo Pyysalo | Jun’ichi Tsujii | Tapio Salakoski

pdf pdf bib A Comparative Study of Syntactic Parsers for Event Extraction
[W10-1905]: Makoto Miwa | Sampo Pyysalo | Tadayoshi Hara | Jun’ichi Tsujii

pdf pdf bib Towards Event Extraction from Full Texts on Infectious Diseases
[W10-1919]: Sampo Pyysalo | Tomoko Ohta | Han-Cheol Cho | Dan Sullivan | Chunhong Mao | Bruno Sobral | Jun’ichi Tsujii | Sophia Ananiadou

pdf pdf bib Integration of Static Relations to Enhance Event Extraction from Text
[W10-1921]: Sofie Van Landeghem | Sampo Pyysalo | Tomoko Ohta | Yves Van de Peer

pdf pdf bib Evaluating Dependency Representations for Event Extraction
[C10-1088]: Makoto Miwa | Sampo Pyysalo | Tadayoshi Hara | Jun’ichi Tsujii

2009

pdf pdf bib Static Relations: a Piece in the Biomedical Information Extraction Puzzle
[W09-1301]: Sampo Pyysalo | Tomoko Ohta | Jin-Dong Kim | Jun’ichi Tsujii

pdf pdf bib Incorporating GENETAG-style annotation to GENIA corpus
[W09-1313]: Tomoko Ohta | Jin-Dong Kim | Sampo Pyysalo | Yue Wang | Jun’ichi Tsujii

pdf pdf bib Overview of BioNLP’09 Shared Task on Event Extraction
[W09-1401]: Jin-Dong Kim | Tomoko Ohta | Sampo Pyysalo | Yoshinobu Kano | Jun’ichi Tsujii

pdf pdf bib Learning to Extract Biological Event and Relation Graphs
[W09-4605]: Jari Björne | Filip Ginter | Juho Heimonen | Sampo Pyysalo | Tapio Salakoski

2008

pdf pdf bib A Graph Kernel for Protein-Protein Interaction Extraction
[W08-0601]: Antti Airola | Sampo Pyysalo | Jari Björne | Tapio Pahikkala | Filip Ginter | Tapio Salakoski

2007

pdf pdf bib On the unification of syntactic annotations under the Stanford dependency scheme: A case study on BioInfer and GENIA
[W07-1004]: Sampo Pyysalo | Filip Ginter | Veronika Laippala | Katri Haverinen | Juho Heimonen | Tapio Salakoski

2004

pdf pdf bib Analysis of Link Grammar on Biomedical Dependency Corpus Targeted at Protein-Protein Interactions
[W04-1203]: Sampo Pyysalo | Filip Ginter | Tapio Pahikkala | Jorma Boberg | Jouni Järvinen | Tapio Salakoski | Jeppe Koivula